CDS

Accession Number TCMCG017C24430
gbkey CDS
Protein Id OMO73780.1
Location join(6054..6077,6499..6543,6890..7087,7187..7463,7562..7719,11043..11330,11608..11697,12304..12773,12890..13132,13668..14620,15295..15443,15523..15639,15845..15982,16123..16572)
GeneID InterPro:IPR001159
Organism Corchorus olitorius
locus_tag COLO4_26853

Protein

Length 1199aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215141, BioSample:SAMN03160584
db_source AWUE01019393.1
Definition Double-stranded RNA-binding protein [Corchorus olitorius]
Locus_tag COLO4_26853

EGGNOG-MAPPER Annotation

COG_category IQ
Description Small RNA
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03036        [VIEW IN KEGG]
KEGG_ko ko:K20798        [VIEW IN KEGG]
EC -
KEGG_Pathway -
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0001510        [VIEW IN EMBL-EBI]
GO:0002252        [VIEW IN EMBL-EBI]
GO:0002376        [VIEW IN EMBL-EBI]
GO:0003002        [VIEW IN EMBL-EBI]
GO:0003006        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006379        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006952        [VIEW IN EMBL-EBI]
GO:0006955        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0007389        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008168        [VIEW IN EMBL-EBI]
GO:0008173        [VIEW IN EMBL-EBI]
GO:0009451        [VIEW IN EMBL-EBI]
GO:0009605        [VIEW IN EMBL-EBI]
GO:0009607        [VIEW IN EMBL-EBI]
GO:0009615        [VIEW IN EMBL-EBI]
GO:0009616        [VIEW IN EMBL-EBI]
GO:0009653        [VIEW IN EMBL-EBI]
GO:0009791        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009908        [VIEW IN EMBL-EBI]
GO:0009909        [VIEW IN EMBL-EBI]
GO:0009954        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010033        [VIEW IN EMBL-EBI]
GO:0010051        [VIEW IN EMBL-EBI]
GO:0010093        [VIEW IN EMBL-EBI]
GO:0010305        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010589        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010608        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0014070        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0016441        [VIEW IN EMBL-EBI]
GO:0016458        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0016741        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0031047        [VIEW IN EMBL-EBI]
GO:0031050        [VIEW IN EMBL-EBI]
GO:0032259        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0035194        [VIEW IN EMBL-EBI]
GO:0035195        [VIEW IN EMBL-EBI]
GO:0035196        [VIEW IN EMBL-EBI]
GO:0035279        [VIEW IN EMBL-EBI]
GO:0035821        [VIEW IN EMBL-EBI]
GO:0040029        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043207        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043331        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0043414        [VIEW IN EMBL-EBI]
GO:0044003        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044403        [VIEW IN EMBL-EBI]
GO:0044419        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045087        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048367        [VIEW IN EMBL-EBI]
GO:0048437        [VIEW IN EMBL-EBI]
GO:0048444        [VIEW IN EMBL-EBI]
GO:0048449        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048580        [VIEW IN EMBL-EBI]
GO:0048608        [VIEW IN EMBL-EBI]
GO:0048646        [VIEW IN EMBL-EBI]
GO:0048731        [VIEW IN EMBL-EBI]
GO:0048831        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050793        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051239        [VIEW IN EMBL-EBI]
GO:0051607        [VIEW IN EMBL-EBI]
GO:0051701        [VIEW IN EMBL-EBI]
GO:0051704        [VIEW IN EMBL-EBI]
GO:0051707        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0051817        [VIEW IN EMBL-EBI]
GO:0052018        [VIEW IN EMBL-EBI]
GO:0052249        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0061458        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070887        [VIEW IN EMBL-EBI]
GO:0070918        [VIEW IN EMBL-EBI]
GO:0071310        [VIEW IN EMBL-EBI]
GO:0071359        [VIEW IN EMBL-EBI]
GO:0071407        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090305        [VIEW IN EMBL-EBI]
GO:0090501        [VIEW IN EMBL-EBI]
GO:0090567        [VIEW IN EMBL-EBI]
GO:0090696        [VIEW IN EMBL-EBI]
GO:0090697        [VIEW IN EMBL-EBI]
GO:0090698        [VIEW IN EMBL-EBI]
GO:0090701        [VIEW IN EMBL-EBI]
GO:0098542        [VIEW IN EMBL-EBI]
GO:0098586        [VIEW IN EMBL-EBI]
GO:0098795        [VIEW IN EMBL-EBI]
GO:0099402        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901698        [VIEW IN EMBL-EBI]
GO:1901699        [VIEW IN EMBL-EBI]
GO:1905392        [VIEW IN EMBL-EBI]
GO:1905393        [VIEW IN EMBL-EBI]
GO:2000026        [VIEW IN EMBL-EBI]
GO:2000241        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGCAGCAACAACGTAATCTGAAGAGTGTGAGACATTTTTCTGAAGACATTTTACTAAGTGAGATGAAGCCACAGATTCCAGACGTGAGCCATGGCTACCATTTGGTCAAAGGAAAAATGGGTCATGGAATGGAAGACTACATTGTTGCAGAAACTAAGAAAACCAACGGCCATGACCTTCGACTCTATGCTATTTTCGATGGTCACTCGGGTCGTAATGTTGCCAAATACTTGCAACGTCACCTCTTTGACAACATTCTGGATCAACCTGAATTCTGGGAGAATCCGAAGGAAGCAATCAAAAGAGCATATAAAGAAACAGATGATGAAATATTGGAGCGAGTGGGTGATATGCGAGGCGGTTCGACAGCTGTCACTGCAATACTAATCGATGGCGAGAAGCTAATTGTGGCTAACGTTGGTGACTCTCGAGCAATCTTATGCCGAGCTAATGGTGGAATTAAGCAGATGACAATAGACCATGATCCGCTCAAGGAGAAACAACTTGTCGAAAACAGAGGTGGATTTGTGTCTGAAATGCCTGGGAATGTTCCTAGAGTGGATGGGCAGTTGGCGATGACAAGGGCGTTTGGAGATGCAAAGGTGAAGGAACATATAACTTCAGAACCAGATGTGAGAGTTGAAAGGATTGATCCAAATACAGATGAATTCATCATTTTGGCAAGTGATGGCCTTTGGAAGACACCTCGACGCCGCATGGAAACGGGAGGATCATTGCCACATACAACAAGAAAGCCAACCCTTACACCAAAGGCTATTATACACCAGAAGTATGGAAATAAAGCGTCTTATAAGGTGGAGGAAGTAGAGGAGCCTGCTCAAAATGGATGCCCAGGGTTGGCAATCCTTCAGAAGGGTCCCTGCCTTTATCGTTGCACCTTGGAGCTTCCAGAATTTTCTGTCACGTCTGAGTCCTTTAAGAAGAAAAAAGATGCTGAGCAGTCTGCTGCTCAGATGGCATTGGACAAGCTTGGCATCCGTCCTTCTGCAGATAATCCCACGGCAGAGGAAGCATGGACAGATTTGATTGCTCGTATCAAGTATATATTCTCAAATGAGTCATTGAATAAGTTCCTTTCAGCTCTTCATCCTTTGAGCGGTCACTTAAAAGCAGCTTTAGGCAGAGTTGGCGATCTTAACGGTTCAGTTCCTGCTTCTGCTATTGCTATATGTGATGGAAAACCTAATAATCTCTGCAAAATAATTAACCCTAAGATAGAGTCTCAACCTTTCTTGGTCATATCATATATCATGAGAGCAGCTACAAGGTTACCAGAGTTGGTTGTTGGTCCTGAGGGACAACTTTCGATTCGGCGGAAAAATCCATATCCTCCTGATCTCATAGAATCAATACTATCTCAAGAATCTGGTGTTGCTGAAAACGTAACAACCATGGCCATATATATCCCATGTTCAACTGAAAAGCCTGTTGAACCAGTTATTCTTAATATTTCCTCATCAAGTTATTACCTTGATGTCATTGCACAAAAGCTTGGATTATCAGATGCTAGCAAAGTTCTGATCTCAAGGACTATTGGTAAAGCTTCATCTGAAACAAGATTTTACTTTGCTGCTCCCAAGTCATTTCCCATAGATATCCCATCTGATCATCTAAATGATAAAGCTCTTAAGTTTGGAGAACCTTTGAATGCTAGGGCCAGCTACATTTGTGGCCAAAAGATATATGGTGATTCAATTTTGGCGTCCATTGGTTACACTTGGAAATCCCAAGACCTTTTCCATGAAGATGTCACCTTGCAATCATACTACAGGATGGTTATAAGTAAAATACCCAGCGGACTTTACAAGTTGTCTAGAGAGGCAATACTTGCAGCAGAATTGCCCCTTACATTCACTACAAGGACAAATTGGAAGGGTTCTTTCCCAAGAGAAATTCTCTGTTCATTTTGTCGCCAGCATAGGCTGTTAGAGCCCATCTTTTCTATCTCAAGTATTCCTACAAAAGCATCATCGGAGTTGTCTAGATCAAGCAAGAAACTAAAGGTATCTGAGTCAGCTGAGCAAGATACAGAGTATGCAGATGGAGATGACACTGTTTATGCTGGTGCTAAATCTGTGGGATTAGCAAGCAGTTTTAGTTGTGAAGTAAAACTATATTCTAAGTCTCAAGATCTGATTTTGGTCTGTGCTCCCAATGTTTTGTATAAGAAGCAGAATGATGCTGTCCAGAATGCTTCATTAAAAGTTTTATCATGGTTGAATGCATATTTTAAGGATACTGGCATGCCCTTGGAGAAGCTAAAACAATTAGCCAGTGTCTTTGATATTAATTTTTATCCTCAAAATTTTATCAAGGAAGTCGTATCGTGCCTATTTGTTAATAGTTTTCAGCACAGTGAAACCTTTGGAGGCAAACCTGAACCAAATGGTAATAATATTCTAAATGGTGTGGTGGAAGATGCTGAGAGTTCTATAGATACAGAAGGTCTGGATTCTGGTGTTTGCCTATCTAATGGGTCCCTTTTATGTGTATGTTATTCTGTATCTTTAGTGACAAAAGATAAACTTCAGAAAGAGCTTCTTGAAAGTGCTGAGGAGTTTGAATTTGAGATTGGGACTGGAGCTGTAATTCCCTCAATGGAAGCAATTGTAAGTCAGATGTCAGTTGGTCAGTCTGCTTGTTTCCATACAGAGTTGCCTCCTCAAGATTTGGTTTTAGCTGCAGCTAAAGATTCTCCAAGTGCTCTTGCATTGTTGTCTTCACCCTGCTGCTTGGAGTACTCAATCATCTTGTTGCGGTTGACGGAACCTCCAGAAGACAGAATGGAGCAGGCTCTTTTCAGCCCACCACTTTCTAAGCAACGCGTAGAATATGCAGTACAGCACATAAGAGATTCTTGTGCTACTTCTTTGGTTGATTTTGGATGTGGTTCTGGTAGTTTACTGGAGTCTTTGCTGGATTATCCAACTTCTTTGGAAACAATTGTTGGCGTTGATATTTCACAGAAGAGTCTTAGCCGTGCAGCAAAGGTTCTTCATTCAAAACTAACCATGAATTCAGATCCTGATGCACCAAGCAGAGGCATAAAATCCGCAGTTCTTTATGATGGTTCTATAACAGATTTTGATTCTCGGTTGTGTGGATTTGATCTTGGTACATGCTTAGAGGTAATTGAGCATATGGAGGAGGAACAGGCCTGTATGTTCGGTGATGTTGTGCTGAGTTCTTTTTGCCCCAGGATTCTTATTGTTTCGACTCCCAACTACGAATACAATGTAATACTCCAGGGATCCAATATAACAAGCCAAGAAGATGATCCTGAGGAGAAGATTCAGTCACAATCATGTAAGTTTCGCAACCATGACCACAAGTTTGAGTGGACAAGAGAGCAATTCAACCATTGGGCATCCAACTTAGCAGTTAGGCACAATTATACCGTCGAGTTCAGTGGGGTTGGTGGTTCTGCTGATGTGGAACCAGGATTTGCTTCTCAGATTGCTGTCTTTAGAAGGGTTGTTTTACCTGAGGAAGAAAATCCTCAGGAGCATAAAGATTTGGAATGCAAATACAGTGTTATATGGAAGTGGAATAGGTCTAATTCTGCTTTGACTGACTAA
Protein:  
MQQQRNLKSVRHFSEDILLSEMKPQIPDVSHGYHLVKGKMGHGMEDYIVAETKKTNGHDLRLYAIFDGHSGRNVAKYLQRHLFDNILDQPEFWENPKEAIKRAYKETDDEILERVGDMRGGSTAVTAILIDGEKLIVANVGDSRAILCRANGGIKQMTIDHDPLKEKQLVENRGGFVSEMPGNVPRVDGQLAMTRAFGDAKVKEHITSEPDVRVERIDPNTDEFIILASDGLWKTPRRRMETGGSLPHTTRKPTLTPKAIIHQKYGNKASYKVEEVEEPAQNGCPGLAILQKGPCLYRCTLELPEFSVTSESFKKKKDAEQSAAQMALDKLGIRPSADNPTAEEAWTDLIARIKYIFSNESLNKFLSALHPLSGHLKAALGRVGDLNGSVPASAIAICDGKPNNLCKIINPKIESQPFLVISYIMRAATRLPELVVGPEGQLSIRRKNPYPPDLIESILSQESGVAENVTTMAIYIPCSTEKPVEPVILNISSSSYYLDVIAQKLGLSDASKVLISRTIGKASSETRFYFAAPKSFPIDIPSDHLNDKALKFGEPLNARASYICGQKIYGDSILASIGYTWKSQDLFHEDVTLQSYYRMVISKIPSGLYKLSREAILAAELPLTFTTRTNWKGSFPREILCSFCRQHRLLEPIFSISSIPTKASSELSRSSKKLKVSESAEQDTEYADGDDTVYAGAKSVGLASSFSCEVKLYSKSQDLILVCAPNVLYKKQNDAVQNASLKVLSWLNAYFKDTGMPLEKLKQLASVFDINFYPQNFIKEVVSCLFVNSFQHSETFGGKPEPNGNNILNGVVEDAESSIDTEGLDSGVCLSNGSLLCVCYSVSLVTKDKLQKELLESAEEFEFEIGTGAVIPSMEAIVSQMSVGQSACFHTELPPQDLVLAAAKDSPSALALLSSPCCLEYSIILLRLTEPPEDRMEQALFSPPLSKQRVEYAVQHIRDSCATSLVDFGCGSGSLLESLLDYPTSLETIVGVDISQKSLSRAAKVLHSKLTMNSDPDAPSRGIKSAVLYDGSITDFDSRLCGFDLGTCLEVIEHMEEEQACMFGDVVLSSFCPRILIVSTPNYEYNVILQGSNITSQEDDPEEKIQSQSCKFRNHDHKFEWTREQFNHWASNLAVRHNYTVEFSGVGGSADVEPGFASQIAVFRRVVLPEEENPQEHKDLECKYSVIWKWNRSNSALTD